MLflow Python Skill

Unified read/write MLflow operations via Python API with QuantStats integration for comprehensive trading metrics.

ADR: 2025-12-12-mlflow-python-skill

Note: This skill uses Pandas (MLflow API requires it). The mlflow-python path is auto-skipped by the Polars preference hook.

Self-Evolving Skill: This skill improves through use. If instructions are wrong, parameters drifted, or a workaround was needed — fix this file immediately, don't defer. Only update for real, reproducible issues.

When to Use This Skill

CAN Do:

Log backtest metrics (Sharpe, max_drawdown, total_return, etc.)
Log experiment parameters (strategy config, timeframes)
Create and manage experiments
Query runs with SQL-like filtering
Calculate 70+ trading metrics via QuantStats
Retrieve metric history (time-series data)

CANNOT Do:

Direct database access to MLflow backend
Artifact storage management (S3/GCS configuration)
MLflow server administration

Prerequisites

Authentication Setup

MLflow uses separate environment variables for credentials (NOT embedded in URI):

# Option 1: .env.local + uv --env-file (recommended)
# Create .env.local (gitignored) in the skill directory with the lines below,
# then run scripts as: uv run --env-file .env.local scripts/<script>.py
MLFLOW_TRACKING_URI=http://mlflow.eonlabs.com:5000
MLFLOW_TRACKING_USERNAME=eonlabs
MLFLOW_TRACKING_PASSWORD=<password>

# Option 2: Direct environment variables
export MLFLOW_TRACKING_URI="http://mlflow.eonlabs.com:5000"
export MLFLOW_TRACKING_USERNAME="eonlabs"
export MLFLOW_TRACKING_PASSWORD="<password>"

Verify Connection

/usr/bin/env bash << 'SKILL_SCRIPT_EOF'
ROOT="$(cc-plugin-root devops-tools)"
cd "$ROOT/skills/mlflow-python"
uv run scripts/query_experiments.py experiments
SKILL_SCRIPT_EOF

Quick Start Workflows

A. Log Backtest Results (Primary Use Case)

/usr/bin/env bash << 'SKILL_SCRIPT_EOF_2'
ROOT="$(cc-plugin-root devops-tools)"
cd "$ROOT/skills/mlflow-python"
uv run scripts/log_backtest.py \
  --experiment "crypto-backtests" \
  --run-name "btc_momentum_v2" \
  --returns path/to/returns.csv \
  --params '{"strategy": "momentum", "timeframe": "1h"}'
SKILL_SCRIPT_EOF_2

B. Search Experiments

uv run scripts/query_experiments.py experiments

C. Query Runs with Filter

uv run scripts/query_experiments.py runs \
  --experiment "crypto-backtests" \
  --filter "metrics.sharpe_ratio > 1.5" \
  --order-by "metrics.sharpe_ratio DESC"

D. Create New Experiment

uv run scripts/create_experiment.py \
  --name "crypto-backtests-2025" \
  --description "Q1 2025 cryptocurrency trading strategy backtests"

E. Get Metric History

uv run scripts/get_metric_history.py \
  --run-id abc123 \
  --metrics sharpe_ratio,cumulative_return

QuantStats Metrics Available

The log_backtest.py script calculates 70+ metrics via QuantStats, including:

Category	Metrics
Ratios	sharpe, sortino, calmar, omega, treynor
Returns	cagr, total_return, avg_return, best, worst
Drawdown	max_drawdown, avg_drawdown, drawdown_days
Trade	win_rate, profit_factor, payoff_ratio, consecutive_wins/losses
Risk	volatility, var, cvar, ulcer_index, serenity_index
Advanced	kelly_criterion, recovery_factor, risk_of_ruin, information_ratio

See quantstats-metrics.md for full list.

Bundled Scripts

Script	Purpose
`log_backtest.py`	Log backtest returns with QuantStats metrics
`query_experiments.py`	Search experiments and runs (replaces CLI)
`create_experiment.py`	Create new experiment with metadata
`get_metric_history.py`	Retrieve metric time-series data

Configuration

Configuration comes from MLFLOW_* environment variables. Create .env.local (gitignored) for credentials and load it per command with uv run --env-file .env.local scripts/<script>.py:

MLFLOW_TRACKING_URI=http://mlflow.eonlabs.com:5000
MLFLOW_TRACKING_USERNAME=eonlabs
MLFLOW_TRACKING_PASSWORD=<password>

Reference Documentation

Authentication Patterns - Idiomatic MLflow auth
QuantStats Metrics - Full list of 70+ metrics
Query Patterns - DataFrame operations
Migration from CLI - CLI to Python API mapping

Migration from mlflow-query

This skill replaces the CLI-based mlflow-query skill. Key differences:

Feature	mlflow-query (old)	mlflow-python (new)
Log metrics	Not supported	`mlflow.log_metrics()`
Log params	Not supported	`mlflow.log_params()`
Query runs	CLI text parsing	DataFrame output
Metric history	Workaround only	Native support
Auth pattern	Embedded in URI	Separate env vars

See migration-from-cli.md for detailed mapping.

Troubleshooting

Issue	Cause	Solution
Connection refused	MLflow server not running	Verify MLFLOW_TRACKING_URI and server status
Authentication failed	Wrong credentials	Check MLFLOW_TRACKING_USERNAME and PASSWORD in .env
Experiment not found	Experiment name typo	Run `query_experiments.py experiments` to list all
QuantStats import error	Missing dependency	`uv add quantstats` in skill directory
Pandas import warning	Expected for this skill	Ignore - MLflow requires Pandas (hook-excluded)
Run creation fails	Experiment doesn't exist	Use `create_experiment.py` to create first
Metric history empty	Wrong run_id or metric name	Verify run_id with `query_experiments.py runs`
Returns CSV parse error	Wrong date format or columns	Check CSV has date index and returns column

Post-Execution Reflection

After this skill completes, check before closing:

Did the command succeed? — If not, fix the instruction or error table that caused the failure.
Did parameters or output change? — If the underlying tool's interface drifted, update Usage examples and Parameters table to match.
Was a workaround needed? — If you had to improvise (different flags, extra steps), update this SKILL.md so the next invocation doesn't need the same workaround.

Only update if the issue is real and reproducible — not speculative.